1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:4.37e-29:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX53_RS10285
Response regulator OmpR family
Dorea formicigenerans · GCF_003459565
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003459565#DWX53_RS10285Stable P2CS identifier used across views.
GenomeGCF_003459565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:147:2.94e-23:218:76:77- Raw architecture: Response_reg:5:4.37e-29:114:110:111#Trans_reg_C:147:2.94e-23:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003459565::NZ_QRWH01000009.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42055-43624Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX53_10285RefSeq proteinWP_118145863.1
Context group ID
GCF_003459565::NZ_QRWH01000009.1::G00060Context members
DWX53_RS10285DWX53_RS10290
Partner locus tags
DWX53_RS10285DWX53_RS10290
Partner old locus tags
DWX53_10285DWX53_10290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118145863.1Primary protein accession used for annex mappings.
UniProt accessionA0A412MC89Primary UniProt accession resolved in the annex database.
UniProt IDA0A412MC89_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX53_RS10285Primary locus identifier stored in the genes table.
Old locus tagDWX53_10285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRWH01000009.1Sequence record reported by the local genomic context database.
Genomic interval42 055-42 732 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 055-43 624 ntGCF_003459565::NZ_QRWH01000009.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003459565::NZ_QRWH01000009.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRWH01000009.1All displayed genes belong to this local TCS context.
Neighborhood span42 055-43 624 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 055 nt43 624 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX53_RS10285GCF_003459565#DWX53_RS10285
RROmpRCurrent focus
42 055-42 732 nt · Forward (+)
DWX53_RS10290GCF_003459565#DWX53_RS10290
HKClassic
42 725-43 624 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003459565#DWX53_RS10285The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1479897
Simplified PFAM architecture for RROC_1479897
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1479897
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_003459565#DWX53_RS10285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003459565
AssemblyASM345956v1 · Scaffoldhaploid
Genome composition3 456 853 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 109 · HK 59 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key