1 Response_reg#1
4-112 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:4:2.02e-35:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY32_RS07355
Response regulator OmpR family
Agathobacter rectalis · GCF_003458515
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003458515#DWY32_RS07355Stable P2CS identifier used across views.
GenomeGCF_003458515Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 231 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:153:4.06e-26:229:78:77- Raw architecture: Response_reg:4:2.02e-35:112:111:111#Trans_reg_C:153:4.06e-26:229:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003458515::NZ_QRUL01000006.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29877-31755Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY32_07360RefSeq proteinWP_117918941.1
Context group ID
GCF_003458515::NZ_QRUL01000006.1::G00034Context members
DWY32_RS07355DWY32_RS07360
Partner locus tags
DWY32_RS07355DWY32_RS07360
Partner old locus tags
DWY32_07360DWY32_07365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117918941.1Primary protein accession used for annex mappings.
UniProt accessionA0A414A2X7Primary UniProt accession resolved in the annex database.
UniProt IDA0A414A2X7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY32_RS07355Primary locus identifier stored in the genes table.
Old locus tagDWY32_07360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRUL01000006.1Sequence record reported by the local genomic context database.
Genomic interval29 877-30 572 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 877-31 755 ntGCF_003458515::NZ_QRUL01000006.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003458515::NZ_QRUL01000006.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRUL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span29 877-31 755 nt1 879 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 877 nt31 755 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY32_RS07355GCF_003458515#DWY32_RS07355
RROmpRCurrent focus
29 877-30 572 nt · Forward (+)
DWY32_RS07360GCF_003458515#DWY32_RS07360
HKClassic
30 562-31 755 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003458515#DWY32_RS07355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1168197
Simplified PFAM architecture for RROC_1168197
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1168197
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_003458515#DWY32_RS07355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003458515
AssemblyASM345851v1 · Scaffoldhaploid
Genome composition3 217 393 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 33 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key