1 HisKA_3#1
239-306 aa · 68 aa · 15.6% of protein
Raw token
HisKA_3:239:1.9e-22:306:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY94_RS15565
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003457945
ClassHKTypeClassicLength437 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457945#DWY94_RS15565Stable P2CS identifier used across views.
GenomeGCF_003457945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length437 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 437 aa (35.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa437 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-432 aa · 89 aa · 20.4% of protein
Raw token
HATPase_c:344:0.000000000000112:432:109:109- Raw architecture: HisKA_3:239:1.9e-22:306:68:68#HATPase_c:344:0.000000000000112:432:109:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457945::NZ_QRTG01000027.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43358-45338Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY94_15565RefSeq proteinWP_003536181.1
Context group ID
GCF_003457945::NZ_QRTG01000027.1::G00013Context members
DWY94_RS15560DWY94_RS15565
Partner locus tags
DWY94_RS15560DWY94_RS15565
Partner old locus tags
DWY94_15560DWY94_15565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536181.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35IMB7Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35IMB7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY94_RS15565Primary locus identifier stored in the genes table.
Old locus tagDWY94_15565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRTG01000027.1Sequence record reported by the local genomic context database.
Genomic interval44 025-45 338 nt1 314 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 358-45 338 ntGCF_003457945::NZ_QRTG01000027.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457945::NZ_QRTG01000027.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRTG01000027.1All displayed genes belong to this local TCS context.
Neighborhood span43 358-45 338 nt1 981 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 358 nt45 338 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY94_RS15560GCF_003457945#DWY94_RS15560
RRNarL
43 358-44 032 nt · Reverse (-)
DWY94_RS15565GCF_003457945#DWY94_RS15565
HKClassicCurrent focus
44 025-45 338 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457945#DWY94_RS15565The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2104920
Simplified PFAM architecture for HKOC_2104920
PFAM domain coverage: 155 / 437 aa (35.5%)
1 aa437 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[239-306] | HATPase_c[345-431]
- Domain count: 2
- Matched identifier: HKOC_2104920
- Positioned domains: HisKA_3 239-306 ; HATPase_c 345-431
Cluster members and taxonomy
Representative gene: GCF_003457945#DWY94_RS15565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003457945
AssemblyASM345794v1 · Scaffoldhaploid
Genome composition3 799 075 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 56 · HK 26 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key