1 Response_reg#1
4-113 aa · 110 aa · 21.5% of protein
Raw token
Response_reg:4:8.09e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY94_RS03775
Response regulator, unclassified
Thomasclavelia ramosa · GCF_003457945
ClassRRTypeunclassifiedLength512 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457945#DWY94_RS03775Stable P2CS identifier used across views.
GenomeGCF_003457945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 512 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
417-458 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:417:0.00000175:458:42:423 HTH_AraC#3
478-508 aa · 31 aa · 6.1% of protein
Raw token
HTH_AraC:478:0.000000675:508:31:42- Raw architecture: Response_reg:4:8.09e-30:113:110:111#HTH_AraC:417:0.00000175:458:42:42#HTH_AraC:478:0.000000675:508:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457945::NZ_QRTG01000003.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27475-30805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY94_03775RefSeq proteinWP_118248428.1
Context group ID
GCF_003457945::NZ_QRTG01000003.1::G00015Context members
DWY94_RS03770DWY94_RS03775
Partner locus tags
DWY94_RS03770DWY94_RS03775
Partner old locus tags
DWY94_03770DWY94_03775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118248428.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY94_RS03775Primary locus identifier stored in the genes table.
Old locus tagDWY94_03775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRTG01000003.1Sequence record reported by the local genomic context database.
Genomic interval29 267-30 805 nt1 539 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 475-30 805 ntGCF_003457945::NZ_QRTG01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457945::NZ_QRTG01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRTG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span27 475-30 805 nt3 331 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 475 nt30 805 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY94_RS03770GCF_003457945#DWY94_RS03770
HKClassic
27 475-29 289 nt · Forward (+)
DWY94_RS03775GCF_003457945#DWY94_RS03775
RRunclassifiedCurrent focus
29 267-30 805 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457805#DWY98_RS02550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0143515
Simplified PFAM architecture for RROC_0143515
PFAM domain coverage: 192 / 512 aa (37.5%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[430-509]
- Domain count: 2
- Matched identifier: RROC_0143515
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 430-509 ; HTH_18 430-509
Cluster members and taxonomy
Representative gene: GCF_003457805#DWY98_RS02550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003457945
AssemblyASM345794v1 · Scaffoldhaploid
Genome composition3 799 075 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 56 · HK 26 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key