1 HisKA#1
52-111 aa · 60 aa · 22.1% of protein
Raw token
HisKA:52:0.00000000000063:111:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY94_RS01740
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003457945
ClassHKTypeClassicLength271 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457945#DWY94_RS01740Stable P2CS identifier used across views.
GenomeGCF_003457945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 271 aa (56.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
156-247 aa · 92 aa · 33.9% of protein
Raw token
HATPase_c:156:9.43e-19:247:93:109- Raw architecture: HisKA:52:0.00000000000063:111:60:64#HATPase_c:156:9.43e-19:247:93:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457945::NZ_QRTG01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span346932-348532Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY94_01740RefSeq proteinWP_158558990.1
Context group ID
GCF_003457945::NZ_QRTG01000001.1::G00002Context members
DWY94_RS01735DWY94_RS01740
Partner locus tags
DWY94_RS01735DWY94_RS01740
Partner old locus tags
DWY94_01735DWY94_01740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158558990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY94_RS01740Primary locus identifier stored in the genes table.
Old locus tagDWY94_01740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRTG01000001.1Sequence record reported by the local genomic context database.
Genomic interval347 717-348 532 nt816 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span346 932-348 532 ntGCF_003457945::NZ_QRTG01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457945::NZ_QRTG01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRTG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span346 932-348 532 nt1 601 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
346 932 nt348 532 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY94_RS01735GCF_003457945#DWY94_RS01735
RROmpR
346 932-347 606 nt · Forward (+)
DWY94_RS01740GCF_003457945#DWY94_RS01740
HKClassicCurrent focus
347 717-348 532 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457805#DWY98_RS01735Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2878791
Simplified PFAM architecture for HKOC_2878791
PFAM domain coverage: 149 / 310 aa (48.1%)
1 aa310 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[91-149] | HATPase_c[196-285]
- Domain count: 2
- Matched identifier: HKOC_2878791
- Positioned domains: HisKA 91-149 ; HATPase_c 196-285
Cluster members and taxonomy
Representative gene: GCF_003457805#DWY98_RS01735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003457945
AssemblyASM345794v1 · Scaffoldhaploid
Genome composition3 799 075 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 56 · HK 26 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key