1 Response_reg#1
4-102 aa · 99 aa · 38.5% of protein
Raw token
Response_reg:4:0.000000000000337:102:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY88_RS09340
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_003457855
ClassRRTypeunclassifiedLength257 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003457855#DWY88_RS09340Stable P2CS identifier used across views.
GenomeGCF_003457855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage99 / 257 aa (38.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.000000000000337:102:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003457855::NZ_QRTJ01000016.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34131-34904Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY88_09345RefSeq proteinWP_118013734.1
Context group ID
GCF_003457855::NZ_QRTJ01000016.1::G00012Context members
DWY88_RS09340
Partner locus tags
DWY88_RS09340
Partner old locus tags
DWY88_09345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118013734.1Primary protein accession used for annex mappings.
UniProt accessionA0A412C1N7Primary UniProt accession resolved in the annex database.
UniProt IDA0A412C1N7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY88_RS09340Primary locus identifier stored in the genes table.
Old locus tagDWY88_09345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRTJ01000016.1Sequence record reported by the local genomic context database.
Genomic interval34 131-34 904 nt774 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 131-34 904 ntGCF_003457855::NZ_QRTJ01000016.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457855::NZ_QRTJ01000016.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRTJ01000016.1All displayed genes belong to this local TCS context.
Neighborhood span34 131-34 904 nt774 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 131 nt34 904 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY88_RS09340GCF_003457855#DWY88_RS09340
RRunclassifiedCurrent focus
34 131-34 904 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457855#DWY88_RS09340The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0668427
Simplified PFAM architecture for RROC_0668427
PFAM domain coverage: 99 / 257 aa (38.5%)
1 aa257 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-102]
- Domain count: 1
- Matched identifier: RROC_0668427
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102
Cluster members and taxonomy
Representative gene: GCF_003457855#DWY88_RS09340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003457855
AssemblyASM345785v1 · Scaffoldhaploid
Genome composition3 802 386 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 46 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key