1 Response_reg#1
4-122 aa · 119 aa · 48.8% of protein
Raw token
Response_reg:4:8.36e-23:122:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY88_RS09255
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_003457855
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003457855#DWY88_RS09255Stable P2CS identifier used across views.
GenomeGCF_003457855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage215 / 244 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-235 aa · 96 aa · 39.3% of protein
Raw token
LytTR:140:5.71e-20:235:99:98- Raw architecture: Response_reg:4:8.36e-23:122:119:111#LytTR:140:5.71e-20:235:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003457855::NZ_QRTJ01000016.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15799-16533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY88_09260RefSeq proteinWP_118013700.1
Context group ID
GCF_003457855::NZ_QRTJ01000016.1::G00010Context members
DWY88_RS09255
Partner locus tags
DWY88_RS09255
Partner old locus tags
DWY88_09260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118013700.1Primary protein accession used for annex mappings.
UniProt accessionA0A412C1X0Primary UniProt accession resolved in the annex database.
UniProt IDA0A412C1X0_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY88_RS09255Primary locus identifier stored in the genes table.
Old locus tagDWY88_09260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRTJ01000016.1Sequence record reported by the local genomic context database.
Genomic interval15 799-16 533 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 799-16 533 ntGCF_003457855::NZ_QRTJ01000016.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457855::NZ_QRTJ01000016.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRTJ01000016.1All displayed genes belong to this local TCS context.
Neighborhood span15 799-16 533 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 799 nt16 533 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY88_RS09255GCF_003457855#DWY88_RS09255
RRLytTRCurrent focus
15 799-16 533 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457855#DWY88_RS09255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0810636
Simplified PFAM architecture for RROC_0810636
PFAM domain coverage: 200 / 244 aa (82.0%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-114] | LytTR[141-235]
- Domain count: 2
- Matched identifier: RROC_0810636
- Positioned domains: Response_reg 10-114 ; Response_reg 10-114 ; LytTR 141-235 ; LytTR 141-235
Cluster members and taxonomy
Representative gene: GCF_003457855#DWY88_RS09255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003457855
AssemblyASM345785v1 · Scaffoldhaploid
Genome composition3 802 386 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 46 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key