1 Response_reg#1
6-110 aa · 105 aa · 44.9% of protein
Raw token
Response_reg:6:3.39e-32:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF102859_RS12800
Response regulator OmpR family
Clostridioides difficile · GCF_003456975
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003456975#CDIF102859_RS12800Stable P2CS identifier used across views.
GenomeGCF_003456975Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 234 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:152:6.52e-35:228:77:77- Raw architecture: Response_reg:6:3.39e-32:110:106:111#Trans_reg_C:152:6.52e-35:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003456975::NZ_CP020378.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2628133-2630245Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF102859_02580RefSeq proteinWP_077708830.1
Context group ID
GCF_003456975::NZ_CP020378.1::G00034Context members
CDIF102859_RS12800CDIF102859_RS12805
Partner locus tags
CDIF102859_RS12800CDIF102859_RS12805
Partner old locus tags
CDIF102859_02580CDIF102859_02581
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077708830.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF102859_RS12800Primary locus identifier stored in the genes table.
Old locus tagCDIF102859_02580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP020378.1Sequence record reported by the local genomic context database.
Genomic interval2 628 133-2 628 837 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 628 133-2 630 245 ntGCF_003456975::NZ_CP020378.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003456975::NZ_CP020378.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP020378.1All displayed genes belong to this local TCS context.
Neighborhood span2 628 133-2 630 245 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 628 133 nt2 630 245 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF102859_RS12800GCF_003456975#CDIF102859_RS12800
RROmpRCurrent focus
2 628 133-2 628 837 nt · Forward (+)
CDIF102859_RS12805GCF_003456975#CDIF102859_RS12805
HKClassic
2 628 827-2 630 245 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003456975#CDIF102859_RS12800The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055515
Simplified PFAM architecture for RROC_1055515
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1055515
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_003456975#CDIF102859_RS12800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003456975
AssemblyASM345697v1 · Complete Genomehaploid
Genome composition4 247 015 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key