1 HisKA_3#1
172-236 aa · 65 aa · 18.2% of protein
Raw token
HisKA_3:172:0.0000000000000447:236:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS15315
Histidine kinase, Classic
Blautia obeum · GCF_003438845
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS15315Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 357 aa (40.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
276-356 aa · 81 aa · 22.7% of protein
Raw token
HATPase_c:276:0.00000000014:356:98:109- Raw architecture: HisKA_3:172:0.0000000000000447:236:67:68#HATPase_c:276:0.00000000014:356:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000008.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50148-51882Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_15320RefSeq proteinWP_117739587.1
Context group ID
GCF_003438845::NZ_QSUB01000008.1::G00059Context members
DXB81_RS15310DXB81_RS15315
Partner locus tags
DXB81_RS15310DXB81_RS15315
Partner old locus tags
DXB81_15315DXB81_15320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117739587.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5A2E3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5A2E3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS15315Primary locus identifier stored in the genes table.
Old locus tagDXB81_15320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000008.1Sequence record reported by the local genomic context database.
Genomic interval50 809-51 882 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 148-51 882 ntGCF_003438845::NZ_QSUB01000008.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000008.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000008.1All displayed genes belong to this local TCS context.
Neighborhood span50 148-51 882 nt1 735 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 148 nt51 882 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS15310GCF_003438845#DXB81_RS15310
RRNarL
50 148-50 768 nt · Reverse (-)
DXB81_RS15315GCF_003438845#DXB81_RS15315
HKClassicCurrent focus
50 809-51 882 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS15315The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2766494
Simplified PFAM architecture for HKOC_2766494
PFAM domain coverage: 146 / 357 aa (40.9%)
1 aa357 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[172-235] | HATPase_c[275-356]
- Domain count: 2
- Matched identifier: HKOC_2766494
- Positioned domains: HisKA_3 172-235 ; HATPase_c 275-356
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS15315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key