1 dCache_1#1
142-272 aa · 131 aa · 22.1% of protein
Raw token
dCache_1:142:0.0000176:272:132:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS01240
Histidine kinase, Classic
Blautia obeum · GCF_003438845
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS01240Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage380 / 594 aa (64.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation4 items
2 HAMP#2
302-371 aa · 70 aa · 11.8% of protein
Raw token
HAMP:302:0.00000000016:371:70:693 His_kinase#3
386-465 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:386:6.82e-29:465:80:804 HATPase_c#4
483-581 aa · 99 aa · 16.7% of protein
Raw token
HATPase_c:483:0.00000239:581:113:109- Raw architecture: dCache_1:142:0.0000176:272:132:195#HAMP:302:0.00000000016:371:70:69#His_kinase:386:6.82e-29:465:80:80#HATPase_c:483:0.00000239:581:113:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span248728-251715Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_01240RefSeq proteinWP_117738729.1
Context group ID
GCF_003438845::NZ_QSUB01000001.1::G00005Context members
DXB81_RS01235DXB81_RS01240
Partner locus tags
DXB81_RS01235DXB81_RS01240
Partner old locus tags
DXB81_01235DXB81_01240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117738729.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5ABE2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5ABE2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS01240Primary locus identifier stored in the genes table.
Old locus tagDXB81_01240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000001.1Sequence record reported by the local genomic context database.
Genomic interval249 931-251 715 nt1 785 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span248 728-251 715 ntGCF_003438845::NZ_QSUB01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span248 728-251 715 nt2 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 728 nt251 715 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS01235GCF_003438845#DXB81_RS01235
RRunclassified
248 728-249 906 nt · Reverse (-)
DXB81_RS01240GCF_003438845#DXB81_RS01240
HKClassicCurrent focus
249 931-251 715 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS01240The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1088511
Simplified PFAM architecture for HKOC_1088511
PFAM domain coverage: 124 / 594 aa (20.9%)
1 aa594 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[324-370] | His_kinase[387-463]
- Domain count: 2
- Matched identifier: HKOC_1088511
- Positioned domains: HAMP 324-370 ; His_kinase 387-463
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS01240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key