1 MASE1#1
388-576 aa · 189 aa · 22.0% of protein
Raw token
MASE1:388:0.000018:576:194:299P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS10780
Histidine kinase, Classic
Blautia obeum · GCF_003438845
ClassHKTypeClassicLength859 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS10780Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
MASE1HisKAHATPase_c
Protein length859 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage349 / 859 aa (40.6%)Merged over positioned domains only.
Domain description1 MASE1,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa859 aa
Domain-by-domain annotation3 items
2 HisKA#2
639-705 aa · 67 aa · 7.8% of protein
Raw token
HisKA:639:0.00000000000000147:705:67:643 HATPase_c#3
751-843 aa · 93 aa · 10.8% of protein
Raw token
HATPase_c:751:0.0000000000102:843:97:109- Raw architecture: MASE1:388:0.000018:576:194:299#HisKA:639:0.00000000000000147:705:67:64#HATPase_c:751:0.0000000000102:843:97:109
- Domain description: 1 MASE1,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span260973-264317Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_10785RefSeq proteinWP_117739269.1
Context group ID
GCF_003438845::NZ_QSUB01000004.1::G00045Context members
DXB81_RS10780DXB81_RS10785
Partner locus tags
DXB81_RS10780DXB81_RS10785
Partner old locus tags
DXB81_10785DXB81_10790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117739269.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5A6E6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5A6E6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS10780Primary locus identifier stored in the genes table.
Old locus tagDXB81_10785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000004.1Sequence record reported by the local genomic context database.
Genomic interval260 973-263 552 nt2 580 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span260 973-264 317 ntGCF_003438845::NZ_QSUB01000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000004.1All displayed genes belong to this local TCS context.
Neighborhood span260 973-264 317 nt3 345 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
260 973 nt264 317 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS10780GCF_003438845#DXB81_RS10780
HKClassicCurrent focus
260 973-263 552 nt · Reverse (-)
DXB81_RS10785GCF_003438845#DXB81_RS10785
RROmpR
263 625-264 317 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS10780The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0473360
Simplified PFAM architecture for HKOC_0473360
PFAM domain coverage: 158 / 859 aa (18.4%)
1 aa859 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[639-704] | HATPase_c[752-843]
- Domain count: 2
- Matched identifier: HKOC_0473360
- Positioned domains: HisKA 639-704 ; HATPase_c 752-843
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS10780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key