1 HisKA#1
235-295 aa · 61 aa · 13.4% of protein
Raw token
HisKA:235:0.000000000000646:295:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS09810
Histidine kinase, Classic
Blautia obeum · GCF_003438845
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS09810Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 454 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-453 aa · 110 aa · 24.2% of protein
Raw token
HATPase_c:344:5.72e-22:453:110:109- Raw architecture: HisKA:235:0.000000000000646:295:61:64#HATPase_c:344:5.72e-22:453:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000004.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65409-67423Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_09815RefSeq proteinWP_117739184.1
Context group ID
GCF_003438845::NZ_QSUB01000004.1::G00042Context members
DXB81_RS09810DXB81_RS09815
Partner locus tags
DXB81_RS09810DXB81_RS09815
Partner old locus tags
DXB81_09815DXB81_09820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117739184.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5A5J0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5A5J0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS09810Primary locus identifier stored in the genes table.
Old locus tagDXB81_09815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000004.1Sequence record reported by the local genomic context database.
Genomic interval65 409-66 773 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 409-67 423 ntGCF_003438845::NZ_QSUB01000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000004.1All displayed genes belong to this local TCS context.
Neighborhood span65 409-67 423 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 409 nt67 423 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS09810GCF_003438845#DXB81_RS09810
HKClassicCurrent focus
65 409-66 773 nt · Reverse (-)
DXB81_RS09815GCF_003438845#DXB81_RS09815
RROmpR
66 764-67 423 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS09810The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1915080
Simplified PFAM architecture for HKOC_1915080
PFAM domain coverage: 170 / 454 aa (37.4%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-295] | HATPase_c[345-453]
- Domain count: 2
- Matched identifier: HKOC_1915080
- Positioned domains: HisKA 235-295 ; HATPase_c 345-453
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS09810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key