1 HAMP#1
280-352 aa · 73 aa · 12.7% of protein
Raw token
HAMP:280:0.000000000982:352:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS08910
Histidine kinase, Classic
Blautia obeum · GCF_003438845
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS08910Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage270 / 577 aa (46.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
367-446 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:367:4e-31:446:80:803 HATPase_c#3
458-574 aa · 117 aa · 20.3% of protein
Raw token
HATPase_c:458:0.000000000000645:574:117:109- Raw architecture: HAMP:280:0.000000000982:352:74:69#His_kinase:367:4e-31:446:80:80#HATPase_c:458:0.000000000000645:574:117:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000003.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span206628-209936Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_08915RefSeq proteinWP_022388698.1
Context group ID
GCF_003438845::NZ_QSUB01000003.1::G00037Context members
DXB81_RS08910DXB81_RS08915
Partner locus tags
DXB81_RS08910DXB81_RS08915
Partner old locus tags
DXB81_08915DXB81_08920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022388698.1Primary protein accession used for annex mappings.
UniProt accessionA0A395ZZP3Primary UniProt accession resolved in the annex database.
UniProt IDA0A395ZZP3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS08910Primary locus identifier stored in the genes table.
Old locus tagDXB81_08915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000003.1Sequence record reported by the local genomic context database.
Genomic interval206 628-208 361 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span206 628-209 936 ntGCF_003438845::NZ_QSUB01000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span206 628-209 936 nt3 309 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
206 628 nt209 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS08910GCF_003438845#DXB81_RS08910
HKClassicCurrent focus
206 628-208 361 nt · Forward (+)
DXB81_RS08915GCF_003438845#DXB81_RS08915
RRunclassified
208 377-209 936 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS14085Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178461
Simplified PFAM architecture for HKOC_1178461
PFAM domain coverage: 197 / 577 aa (34.1%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-446] | HATPase_c[459-575]
- Domain count: 2
- Matched identifier: HKOC_1178461
- Positioned domains: His_kinase 367-446 ; HATPase_c 459-575
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS14085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key