1 Response_reg#1
4-117 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:4:3.1e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS06560
Response regulator, unclassified
Blautia obeum · GCF_003438845
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS06560Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 531 aa (36.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-477 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:436:0.00000000409:477:42:423 HTH_AraC#3
489-525 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:489:0.000000168:525:37:42- Raw architecture: Response_reg:4:3.1e-27:117:114:111#HTH_AraC:436:0.00000000409:477:42:42#HTH_AraC:489:0.000000168:525:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span234532-237669Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_06565RefSeq proteinWP_055055366.1
Context group ID
GCF_003438845::NZ_QSUB01000002.1::G00029Context members
DXB81_RS06555DXB81_RS06560
Partner locus tags
DXB81_RS06555DXB81_RS06560
Partner old locus tags
DXB81_06560DXB81_06565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055055366.1Primary protein accession used for annex mappings.
UniProt accessionA0A174KZ23Primary UniProt accession resolved in the annex database.
UniProt IDA0A174KZ23_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS06560Primary locus identifier stored in the genes table.
Old locus tagDXB81_06565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000002.1Sequence record reported by the local genomic context database.
Genomic interval236 074-237 669 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span234 532-237 669 ntGCF_003438845::NZ_QSUB01000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span234 532-237 669 nt3 138 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
234 532 nt237 669 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS06555GCF_003438845#DXB81_RS06555
HKClassic
234 532-236 031 nt · Forward (+)
DXB81_RS06560GCF_003438845#DXB81_RS06560
RRunclassifiedCurrent focus
236 074-237 669 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS06125Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0109768
Simplified PFAM architecture for RROC_0109768
PFAM domain coverage: 282 / 531 aa (53.1%)
1 aa531 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-117] | GGDEF_2[203-294] | HTH_18[452-527]
- Domain count: 3
- Matched identifier: RROC_0109768
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; GGDEF_2 203-294 ; GGDEF_2 203-294 ; HTH_18 452-527 ; HTH_18 452-527
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS06125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key