1 HAMP#1
190-259 aa · 70 aa · 14.0% of protein
Raw token
HAMP:190:0.000000000000186:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS06555
Histidine kinase, Classic
Blautia obeum · GCF_003438845
ClassHKTypeClassicLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS06555Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 499 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation3 items
2 His_kinase#2
288-367 aa · 80 aa · 16.0% of protein
Raw token
His_kinase:288:2.7e-26:367:80:803 HATPase_c#3
386-493 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:386:0.0000000000000884:493:111:109- Raw architecture: HAMP:190:0.000000000000186:259:70:69#His_kinase:288:2.7e-26:367:80:80#HATPase_c:386:0.0000000000000884:493:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span234532-237669Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_06560RefSeq proteinWP_117738997.1
Context group ID
GCF_003438845::NZ_QSUB01000002.1::G00029Context members
DXB81_RS06555DXB81_RS06560
Partner locus tags
DXB81_RS06555DXB81_RS06560
Partner old locus tags
DXB81_06560DXB81_06565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117738997.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5A8P1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5A8P1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS06555Primary locus identifier stored in the genes table.
Old locus tagDXB81_06560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000002.1Sequence record reported by the local genomic context database.
Genomic interval234 532-236 031 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span234 532-237 669 ntGCF_003438845::NZ_QSUB01000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span234 532-237 669 nt3 138 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
234 532 nt237 669 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS06555GCF_003438845#DXB81_RS06555
HKClassicCurrent focus
234 532-236 031 nt · Forward (+)
DXB81_RS06560GCF_003438845#DXB81_RS06560
RRunclassified
236 074-237 669 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS06555The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1482546
Simplified PFAM architecture for HKOC_1482546
PFAM domain coverage: 240 / 499 aa (48.1%)
1 aa499 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[206-259] | His_kinase[288-364] | HATPase_c[385-493]
- Domain count: 3
- Matched identifier: HKOC_1482546
- Positioned domains: HAMP 206-259 ; His_kinase 288-364 ; HATPase_c 385-493
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS06555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key