1 PAS_3#1
34-107 aa · 74 aa · 11.2% of protein
Raw token
PAS_3:34:0.0000573:107:78:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS06005
Histidine kinase, Hybrid
Blautia obeum · GCF_003438845
ClassHKTypeHybridLength661 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438845#DXB81_RS06005Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage372 / 661 aa (56.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation4 items
2 HisKA#2
285-351 aa · 67 aa · 10.1% of protein
Raw token
HisKA:285:0.0000000000000281:351:67:643 HATPase_c#3
398-512 aa · 115 aa · 17.4% of protein
Raw token
HATPase_c:398:5.43e-29:512:115:1094 Response_reg#4
539-654 aa · 116 aa · 17.5% of protein
Raw token
Response_reg:539:2.14e-32:654:116:111- Raw architecture: PAS_3:34:0.0000573:107:78:89#HisKA:285:0.0000000000000281:351:67:64#HATPase_c:398:5.43e-29:512:115:109#Response_reg:539:2.14e-32:654:116:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438845::NZ_QSUB01000002.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span113380-115365Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_06010RefSeq proteinWP_022388771.1
Context group ID
GCF_003438845::NZ_QSUB01000002.1::G00027Context members
DXB81_RS06005
Partner locus tags
DXB81_RS06005
Partner old locus tags
DXB81_06010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022388771.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AUP1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AUP1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS06005Primary locus identifier stored in the genes table.
Old locus tagDXB81_06010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000002.1Sequence record reported by the local genomic context database.
Genomic interval113 380-115 365 nt1 986 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 380-115 365 ntGCF_003438845::NZ_QSUB01000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span113 380-115 365 nt1 986 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 380 nt115 365 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB81_RS06005GCF_003438845#DXB81_RS06005
HKHybridCurrent focus
113 380-115 365 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS05690Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0870005
Simplified PFAM architecture for HKOC_0870005
PFAM domain coverage: 299 / 661 aa (45.2%)
1 aa661 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[285-351] | HATPase_c[398-513] | Response_reg[539-654]
- Domain count: 3
- Matched identifier: HKOC_0870005
- Positioned domains: HisKA 285-351 ; HATPase_c 398-513 ; Response_reg 539-654
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS05690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key