1 GGDEF#1
198-348 aa · 151 aa · 14.3% of protein
Raw token
GGDEF:198:8e-21:348:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS05990
Histidine kinase, Hybrid
Blautia obeum · GCF_003438845
ClassHKTypeHybridLength1056 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438845#DXB81_RS05990Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1056 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage453 / 1056 aa (42.9%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1056 aa
Domain-by-domain annotation4 items
2 HisKA#2
674-740 aa · 67 aa · 6.3% of protein
Raw token
HisKA:674:2.1e-16:740:67:643 HATPase_c#3
787-904 aa · 118 aa · 11.2% of protein
Raw token
HATPase_c:787:1.19e-27:904:118:1094 Response_reg#4
929-1045 aa · 117 aa · 11.1% of protein
Raw token
Response_reg:929:2.54e-28:1045:117:111- Raw architecture: GGDEF:198:8e-21:348:157:160#HisKA:674:2.1e-16:740:67:64#HATPase_c:787:1.19e-27:904:118:109#Response_reg:929:2.54e-28:1045:117:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438845::NZ_QSUB01000002.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span109691-112861Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_05995RefSeq proteinWP_117738967.1
Context group ID
GCF_003438845::NZ_QSUB01000002.1::G00026Context members
DXB81_RS05990
Partner locus tags
DXB81_RS05990
Partner old locus tags
DXB81_05995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117738967.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5A8R1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5A8R1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS05990Primary locus identifier stored in the genes table.
Old locus tagDXB81_05995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000002.1Sequence record reported by the local genomic context database.
Genomic interval109 691-112 861 nt3 171 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span109 691-112 861 ntGCF_003438845::NZ_QSUB01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span109 691-112 861 nt3 171 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 691 nt112 861 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB81_RS05990GCF_003438845#DXB81_RS05990
HKHybridCurrent focus
109 691-112 861 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS05990The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0255027
Simplified PFAM architecture for HKOC_0255027
PFAM domain coverage: 452 / 1056 aa (42.8%)
1 aa1056 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[199-350] | HisKA[674-740] | HATPase_c[789-904] | Response_reg[929-1045]
- Domain count: 4
- Matched identifier: HKOC_0255027
- Positioned domains: GGDEF 199-350 ; HisKA 674-740 ; HATPase_c 789-904 ; Response_reg 929-1045
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS05990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key