1 SBP_bac_3#1
22-238 aa · 217 aa · 22.9% of protein
Raw token
SBP_bac_3:22:6.91e-32:238:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS05505
Histidine kinase, Hybrid
Blautia obeum · GCF_003438845
ClassHKTypeHybridLength949 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438845#DXB81_RS05505Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length949 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage722 / 949 aa (76.1%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa949 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
260-464 aa · 205 aa · 21.6% of protein
Raw token
SBP_bac_3:260:0.0000000000000212:464:221:2243 HisKA#3
549-617 aa · 69 aa · 7.3% of protein
Raw token
HisKA:549:2.92e-20:617:69:644 HATPase_c#4
664-777 aa · 114 aa · 12.0% of protein
Raw token
HATPase_c:664:2.93e-29:777:114:1095 Response_reg#5
808-924 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:808:7.48e-30:924:117:111- Raw architecture: SBP_bac_3:22:6.91e-32:238:227:224#SBP_bac_3:260:0.0000000000000212:464:221:224#HisKA:549:2.92e-20:617:69:64#HATPase_c:664:2.93e-29:777:114:109#Response_reg:808:7.48e-30:924:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438845::NZ_QSUB01000002.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span433-3282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_05510RefSeq proteinWP_242999540.1
Context group ID
GCF_003438845::NZ_QSUB01000002.1::G00024Context members
DXB81_RS05505
Partner locus tags
DXB81_RS05505
Partner old locus tags
DXB81_05510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242999540.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS05505Primary locus identifier stored in the genes table.
Old locus tagDXB81_05510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000002.1Sequence record reported by the local genomic context database.
Genomic interval433-3 282 nt2 850 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span433-3 282 ntGCF_003438845::NZ_QSUB01000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span433-3 282 nt2 850 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
433 nt3 282 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB81_RS05505GCF_003438845#DXB81_RS05505
HKHybridCurrent focus
433-3 282 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS05505The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0328641
Simplified PFAM architecture for HKOC_0328641
PFAM domain coverage: 509 / 949 aa (53.6%)
1 aa949 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[30-239] | HisKA[549-617] | HATPase_c[664-777] | Response_reg[808-923]
- Domain count: 4
- Matched identifier: HKOC_0328641
- Positioned domains: SBP_bac_3 30-239 ; HisKA 549-617 ; HATPase_c 664-777 ; Response_reg 808-923
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS05505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key