1 Response_reg#1
6-115 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:6:1.38e-25:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS03765
Response regulator OmpR family
Blautia obeum · GCF_003438845
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438845#DXB81_RS03765Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:6.22e-23:221:75:77- Raw architecture: Response_reg:6:1.38e-25:115:111:111#Trans_reg_C:148:6.22e-23:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438845::NZ_QSUB01000001.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span776529-777200Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_03765RefSeq proteinWP_117738869.1
Context group ID
GCF_003438845::NZ_QSUB01000001.1::G00017Context members
DXB81_RS03765
Partner locus tags
DXB81_RS03765
Partner old locus tags
DXB81_03765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117738869.1Primary protein accession used for annex mappings.
UniProt accessionA0A7G9FTJ3Primary UniProt accession resolved in the annex database.
UniProt IDA0A7G9FTJ3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS03765Primary locus identifier stored in the genes table.
Old locus tagDXB81_03765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000001.1Sequence record reported by the local genomic context database.
Genomic interval776 529-777 200 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span776 529-777 200 ntGCF_003438845::NZ_QSUB01000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span776 529-777 200 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
776 529 nt777 200 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB81_RS03765GCF_003438845#DXB81_RS03765
RROmpRCurrent focus
776 529-777 200 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS03765The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600134
Simplified PFAM architecture for RROC_1600134
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1600134
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS03765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key