1 Response_reg#1
5-114 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:5:4.77e-24:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS03550
Response regulator OmpR family
Blautia obeum · GCF_003438845
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS03550Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-217 aa · 73 aa · 33.3% of protein
Raw token
Trans_reg_C:145:7.73e-26:217:77:77- Raw architecture: Response_reg:5:4.77e-24:114:112:111#Trans_reg_C:145:7.73e-26:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span729577-731498Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_03550RefSeq proteinWP_117738848.1
Context group ID
GCF_003438845::NZ_QSUB01000001.1::G00015Context members
DXB81_RS03545DXB81_RS03550
Partner locus tags
DXB81_RS03545DXB81_RS03550
Partner old locus tags
DXB81_03545DXB81_03550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117738848.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5ABX3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5ABX3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS03550Primary locus identifier stored in the genes table.
Old locus tagDXB81_03550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000001.1Sequence record reported by the local genomic context database.
Genomic interval730 839-731 498 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span729 577-731 498 ntGCF_003438845::NZ_QSUB01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span729 577-731 498 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
729 577 nt731 498 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS03545GCF_003438845#DXB81_RS03545
HKClassic
729 577-730 836 nt · Reverse (-)
DXB81_RS03550GCF_003438845#DXB81_RS03550
RROmpRCurrent focus
730 839-731 498 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS03550The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1777257
Simplified PFAM architecture for RROC_1777257
PFAM domain coverage: 180 / 219 aa (82.2%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-217]
- Domain count: 2
- Matched identifier: RROC_1777257
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-217 ; Trans_reg_C 147-217
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS03550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key