1 HisKA#1
57-118 aa · 62 aa · 23.0% of protein
Raw token
HisKA:57:0.000000000234:118:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS03475
Histidine kinase, Classic
Blautia obeum · GCF_003438845
ClassHKTypeClassicLength269 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438845#DXB81_RS03475Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length269 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 269 aa (60.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa269 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
169-268 aa · 100 aa · 37.2% of protein
Raw token
HATPase_c:169:1.37e-30:268:100:109- Raw architecture: HisKA:57:0.000000000234:118:62:64#HATPase_c:169:1.37e-30:268:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438845::NZ_QSUB01000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span715018-716587Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_03475RefSeq proteinWP_330411512.1
Context group ID
GCF_003438845::NZ_QSUB01000001.1::G00014Context members
DXB81_RS03475DXB81_RS03480
Partner locus tags
DXB81_RS03475DXB81_RS03480
Partner old locus tags
DXB81_03475DXB81_03480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330411512.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS03475Primary locus identifier stored in the genes table.
Old locus tagDXB81_03475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000001.1Sequence record reported by the local genomic context database.
Genomic interval715 018-715 827 nt810 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span715 018-716 587 ntGCF_003438845::NZ_QSUB01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span715 018-716 587 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
715 018 nt716 587 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB81_RS03475GCF_003438845#DXB81_RS03475
HKClassicCurrent focus
715 018-715 827 nt · Reverse (-)
DXB81_RS03480GCF_003438845#DXB81_RS03480
RROmpR
715 910-716 587 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS03475The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2908076
Simplified PFAM architecture for HKOC_2908076
PFAM domain coverage: 164 / 269 aa (61.0%)
1 aa269 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[56-118] | HATPase_c[168-268]
- Domain count: 2
- Matched identifier: HKOC_2908076
- Positioned domains: HisKA 56-118 ; HATPase_c 168-268
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS03475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key