1 Response_reg#1
4-119 aa · 116 aa · 48.5% of protein
Raw token
Response_reg:4:0.0000000000000357:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB81_RS03240
Response regulator LytTR family
Blautia obeum · GCF_003438845
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438845#DXB81_RS03240Stable P2CS identifier used across views.
GenomeGCF_003438845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 239 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-232 aa · 93 aa · 38.9% of protein
Raw token
LytTR:140:0.0000000000245:232:98:98- Raw architecture: Response_reg:4:0.0000000000000357:119:118:111#LytTR:140:0.0000000000245:232:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438845::NZ_QSUB01000001.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span664212-664931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB81_03240RefSeq proteinWP_117738828.1
Context group ID
GCF_003438845::NZ_QSUB01000001.1::G00013Context members
DXB81_RS03240
Partner locus tags
DXB81_RS03240
Partner old locus tags
DXB81_03240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117738828.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5ABQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5ABQ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB81_RS03240Primary locus identifier stored in the genes table.
Old locus tagDXB81_03240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUB01000001.1Sequence record reported by the local genomic context database.
Genomic interval664 212-664 931 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span664 212-664 931 ntGCF_003438845::NZ_QSUB01000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438845::NZ_QSUB01000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span664 212-664 931 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
664 212 nt664 931 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB81_RS03240GCF_003438845#DXB81_RS03240
RRLytTRCurrent focus
664 212-664 931 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS03240The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0912981
Simplified PFAM architecture for RROC_0912981
PFAM domain coverage: 207 / 239 aa (86.6%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[140-231]
- Domain count: 2
- Matched identifier: RROC_0912981
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; LytTR 140-231 ; LytTR 140-231
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS03240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003438845
AssemblyASM343884v1 · Scaffoldhaploid
Genome composition3 808 238 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 109 · HK 56 · RR 51CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key