1 HisKA#1
61-124 aa · 64 aa · 23.4% of protein
Raw token
HisKA:61:0.000000000000718:124:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS13225
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438715
ClassHKTypeClassicLength274 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438715#DXB99_RS13225Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length274 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 274 aa (61.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa274 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
169-272 aa · 104 aa · 38.0% of protein
Raw token
HATPase_c:169:0.0000000000000069:272:107:109- Raw architecture: HisKA:61:0.000000000000718:124:64:64#HATPase_c:169:0.0000000000000069:272:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438715::NZ_QSTP01000016.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65729-67205Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_13225RefSeq proteinWP_117719164.1
Context group ID
GCF_003438715::NZ_QSTP01000016.1::G00016Context members
DXB99_RS13220DXB99_RS13225
Partner locus tags
DXB99_RS13220DXB99_RS13225
Partner old locus tags
DXB99_13220DXB99_13225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117719164.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4Y671Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4Y671_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS13225Primary locus identifier stored in the genes table.
Old locus tagDXB99_13225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000016.1Sequence record reported by the local genomic context database.
Genomic interval66 381-67 205 nt825 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span65 729-67 205 ntGCF_003438715::NZ_QSTP01000016.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000016.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000016.1All displayed genes belong to this local TCS context.
Neighborhood span65 729-67 205 nt1 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 729 nt67 205 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB99_RS13220GCF_003438715#DXB99_RS13220
RROmpR
65 729-66 391 nt · Forward (+)
DXB99_RS13225GCF_003438715#DXB99_RS13225
HKClassicCurrent focus
66 381-67 205 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS13225The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2905124
Simplified PFAM architecture for HKOC_2905124
PFAM domain coverage: 167 / 274 aa (60.9%)
1 aa274 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[62-124] | HATPase_c[169-272]
- Domain count: 2
- Matched identifier: HKOC_2905124
- Positioned domains: HisKA 62-124 ; HATPase_c 169-272
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS13225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key