1 Response_reg#1
7-113 aa · 107 aa · 44.2% of protein
Raw token
Response_reg:7:1.16e-16:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB99_RS04990
Response regulator LytTR family
Agathobacter rectalis · GCF_003438715
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438715#DXB99_RS04990Stable P2CS identifier used across views.
GenomeGCF_003438715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 242 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
136-220 aa · 85 aa · 35.1% of protein
Raw token
LytTR:136:0.00000000000000421:220:88:98- Raw architecture: Response_reg:7:1.16e-16:113:109:111#LytTR:136:0.00000000000000421:220:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438715::NZ_QSTP01000003.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span107307-108035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB99_04990RefSeq proteinWP_117718526.1
Context group ID
GCF_003438715::NZ_QSTP01000003.1::G00028Context members
DXB99_RS04990
Partner locus tags
DXB99_RS04990
Partner old locus tags
DXB99_04990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117718526.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4YF66Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4YF66_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB99_RS04990Primary locus identifier stored in the genes table.
Old locus tagDXB99_04990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTP01000003.1Sequence record reported by the local genomic context database.
Genomic interval107 307-108 035 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span107 307-108 035 ntGCF_003438715::NZ_QSTP01000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438715::NZ_QSTP01000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTP01000003.1All displayed genes belong to this local TCS context.
Neighborhood span107 307-108 035 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 307 nt108 035 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB99_RS04990GCF_003438715#DXB99_RS04990
RRLytTRCurrent focus
107 307-108 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438715#DXB99_RS04990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0848488
Simplified PFAM architecture for RROC_0848488
PFAM domain coverage: 205 / 242 aa (84.7%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-117] | LytTR[137-230]
- Domain count: 2
- Matched identifier: RROC_0848488
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; LytTR 137-230 ; LytTR 137-230
Cluster members and taxonomy
Representative gene: GCF_003438715#DXB99_RS04990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438715
AssemblyASM343871v1 · Scaffoldhaploid
Genome composition3 808 347 bp · 40,0% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 39 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key