1 HisKA#1
131-194 aa · 64 aa · 18.1% of protein
Raw token
HisKA:131:0.0000000000000305:194:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB72_RS07215
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438365
ClassHKTypeClassicLength354 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438365#DXB72_RS07215Stable P2CS identifier used across views.
GenomeGCF_003438365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 354 aa (48.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
243-351 aa · 109 aa · 30.8% of protein
Raw token
HATPase_c:243:8.91e-23:351:110:109- Raw architecture: HisKA:131:0.0000000000000305:194:64:64#HATPase_c:243:8.91e-23:351:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438365::NZ_QSUG01000005.1::G00040
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span148650-149714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB72_07210RefSeq proteinWP_117689888.1
Context group ID
GCF_003438365::NZ_QSUG01000005.1::G00040Context members
DXB72_RS07215
Partner locus tags
DXB72_RS07215
Partner old locus tags
DXB72_07210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117689888.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5ABT8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5ABT8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB72_RS07215Primary locus identifier stored in the genes table.
Old locus tagDXB72_07210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSUG01000005.1Sequence record reported by the local genomic context database.
Genomic interval148 650-149 714 nt1 065 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span148 650-149 714 ntGCF_003438365::NZ_QSUG01000005.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438365::NZ_QSUG01000005.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSUG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span148 650-149 714 nt1 065 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 650 nt149 714 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB72_RS07215GCF_003438365#DXB72_RS07215
HKClassicCurrent focus
148 650-149 714 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438365#DXB72_RS07215The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2780433
Simplified PFAM architecture for HKOC_2780433
PFAM domain coverage: 172 / 354 aa (48.6%)
1 aa354 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[132-195] | HATPase_c[244-351]
- Domain count: 2
- Matched identifier: HKOC_2780433
- Positioned domains: HisKA 132-195 ; HATPase_c 244-351
Cluster members and taxonomy
Representative gene: GCF_003438365#DXB72_RS07215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438365
AssemblyASM343836v1 · Scaffoldhaploid
Genome composition3 429 743 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 39 · RR 48CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key