1 Response_reg#1
5-112 aa · 108 aa · 48.2% of protein
Raw token
Response_reg:5:2.11e-33:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS15025
Response regulator OmpR family
Agathobacter rectalis · GCF_003438175
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS15025Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 224 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-222 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:148:7.49e-23:222:76:77- Raw architecture: Response_reg:5:2.11e-33:112:110:111#Trans_reg_C:148:7.49e-23:222:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000041.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5031-6874Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_15020RefSeq proteinWP_117715644.1
Context group ID
GCF_003438175::NZ_QSTI01000041.1::G00036Context members
DXC13_RS15020DXC13_RS15025
Partner locus tags
DXC13_RS15020DXC13_RS15025
Partner old locus tags
DXC13_15015DXC13_15020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117715644.1Primary protein accession used for annex mappings.
UniProt accessionA0A414RAJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A414RAJ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS15025Primary locus identifier stored in the genes table.
Old locus tagDXC13_15020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000041.1Sequence record reported by the local genomic context database.
Genomic interval6 200-6 874 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 031-6 874 ntGCF_003438175::NZ_QSTI01000041.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000041.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000041.1All displayed genes belong to this local TCS context.
Neighborhood span5 031-6 874 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 031 nt6 874 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS15020GCF_003438175#DXC13_RS15020
HKClassic
5 031-6 212 nt · Reverse (-)
DXC13_RS15025GCF_003438175#DXC13_RS15025
RROmpRCurrent focus
6 200-6 874 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS15025The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543308
Simplified PFAM architecture for RROC_1543308
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1543308
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS15025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key