1 Response_reg#1
1-113 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:1:8.29e-20:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS13115
Response regulator, unclassified
Agathobacter rectalis · GCF_003438175
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS13115Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 530 aa (36.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-473 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:431:0.00000017:473:43:423 HTH_AraC#3
485-522 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:485:0.00000000331:522:38:42- Raw architecture: Response_reg:1:8.29e-20:113:113:111#HTH_AraC:431:0.00000017:473:43:42#HTH_AraC:485:0.00000000331:522:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000026.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30149-33467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_13115RefSeq proteinWP_330410947.1
Context group ID
GCF_003438175::NZ_QSTI01000026.1::G00024Context members
DXC13_RS13110DXC13_RS13115
Partner locus tags
DXC13_RS13110DXC13_RS13115
Partner old locus tags
DXC13_13110DXC13_13115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330410947.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS13115Primary locus identifier stored in the genes table.
Old locus tagDXC13_13115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000026.1Sequence record reported by the local genomic context database.
Genomic interval31 875-33 467 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 149-33 467 ntGCF_003438175::NZ_QSTI01000026.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000026.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000026.1All displayed genes belong to this local TCS context.
Neighborhood span30 149-33 467 nt3 319 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 149 nt33 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS13110GCF_003438175#DXC13_RS13110
HKClassic
30 149-31 888 nt · Forward (+)
DXC13_RS13115GCF_003438175#DXC13_RS13115
RRunclassifiedCurrent focus
31 875-33 467 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS13115The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0111760
Simplified PFAM architecture for RROC_0111760
PFAM domain coverage: 191 / 530 aa (36.0%)
1 aa530 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[1-112] | HTH_18[445-523]
- Domain count: 2
- Matched identifier: RROC_0111760
- Positioned domains: Response_reg 1-112 ; Response_reg 1-112 ; HTH_18 445-523 ; HTH_18 445-523
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS13115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key