1 sCache_like#1
54-130 aa · 77 aa · 17.5% of protein
Raw token
sCache_like:54:0.000000393:130:78:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS08925
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438175
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS08925Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 440 aa (57.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
222-287 aa · 66 aa · 15.0% of protein
Raw token
HisKA:222:6.97e-18:287:66:643 HATPase_c#3
332-440 aa · 109 aa · 24.8% of protein
Raw token
HATPase_c:332:8.27e-32:440:109:109- Raw architecture: sCache_like:54:0.000000393:130:78:114#HisKA:222:6.97e-18:287:66:64#HATPase_c:332:8.27e-32:440:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000012.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53841-55876Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_08925RefSeq proteinWP_117715058.1
Context group ID
GCF_003438175::NZ_QSTI01000012.1::G00009Context members
DXC13_RS08920DXC13_RS08925
Partner locus tags
DXC13_RS08920DXC13_RS08925
Partner old locus tags
DXC13_08920DXC13_08925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117715058.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4X4X5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4X4X5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS08925Primary locus identifier stored in the genes table.
Old locus tagDXC13_08925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000012.1Sequence record reported by the local genomic context database.
Genomic interval54 554-55 876 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 841-55 876 ntGCF_003438175::NZ_QSTI01000012.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000012.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000012.1All displayed genes belong to this local TCS context.
Neighborhood span53 841-55 876 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 841 nt55 876 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS08920GCF_003438175#DXC13_RS08920
RROmpR
53 841-54 509 nt · Forward (+)
DXC13_RS08925GCF_003438175#DXC13_RS08925
HKClassicCurrent focus
54 554-55 876 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS08925The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2074109
Simplified PFAM architecture for HKOC_2074109
PFAM domain coverage: 172 / 440 aa (39.1%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[223-287] | HATPase_c[333-439]
- Domain count: 2
- Matched identifier: HKOC_2074109
- Positioned domains: HisKA 223-287 ; HATPase_c 333-439
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS08925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key