1 HisKA#1
591-656 aa · 66 aa · 8.2% of protein
Raw token
HisKA:591:7.03e-19:656:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS08880
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438175
ClassHKTypeClassicLength807 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS08880Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length807 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 807 aa (19.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa807 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
702-795 aa · 94 aa · 11.6% of protein
Raw token
HATPase_c:702:0.000000000004:795:100:109- Raw architecture: HisKA:591:7.03e-19:656:66:64#HATPase_c:702:0.000000000004:795:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000012.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43656-46786Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_08880RefSeq proteinWP_117715053.1
Context group ID
GCF_003438175::NZ_QSTI01000012.1::G00008Context members
DXC13_RS08875DXC13_RS08880
Partner locus tags
DXC13_RS08875DXC13_RS08880
Partner old locus tags
DXC13_08875DXC13_08880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117715053.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4X4C7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4X4C7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS08880Primary locus identifier stored in the genes table.
Old locus tagDXC13_08880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000012.1Sequence record reported by the local genomic context database.
Genomic interval44 363-46 786 nt2 424 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 656-46 786 ntGCF_003438175::NZ_QSTI01000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000012.1All displayed genes belong to this local TCS context.
Neighborhood span43 656-46 786 nt3 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 656 nt46 786 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS08875GCF_003438175#DXC13_RS08875
RROmpR
43 656-44 345 nt · Forward (+)
DXC13_RS08880GCF_003438175#DXC13_RS08880
HKClassicCurrent focus
44 363-46 786 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS08880The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0544723
Simplified PFAM architecture for HKOC_0544723
PFAM domain coverage: 164 / 807 aa (20.3%)
1 aa807 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[591-655] | HATPase_c[703-801]
- Domain count: 2
- Matched identifier: HKOC_0544723
- Positioned domains: HisKA 591-655 ; HATPase_c 703-801
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS08880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key