1 HAMP#1
184-253 aa · 70 aa · 14.0% of protein
Raw token
HAMP:184:0.00000000000000606:253:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS08495
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438175
ClassHKTypeClassicLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS08495Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 499 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation3 items
2 HisKA#2
268-331 aa · 64 aa · 12.8% of protein
Raw token
HisKA:268:0.00000000000000903:331:64:643 HATPase_c#3
378-491 aa · 114 aa · 22.8% of protein
Raw token
HATPase_c:378:1.06e-32:491:114:109- Raw architecture: HAMP:184:0.00000000000000606:253:71:69#HisKA:268:0.00000000000000903:331:64:64#HATPase_c:378:1.06e-32:491:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000011.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58565-60877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_08495RefSeq proteinWP_117715016.1
Context group ID
GCF_003438175::NZ_QSTI01000011.1::G00006Context members
DXC13_RS08490DXC13_RS08495
Partner locus tags
DXC13_RS08490DXC13_RS08495
Partner old locus tags
DXC13_08490DXC13_08495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117715016.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4X578Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4X578_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS08495Primary locus identifier stored in the genes table.
Old locus tagDXC13_08495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000011.1Sequence record reported by the local genomic context database.
Genomic interval59 378-60 877 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 565-60 877 ntGCF_003438175::NZ_QSTI01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000011.1All displayed genes belong to this local TCS context.
Neighborhood span58 565-60 877 nt2 313 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 565 nt60 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS08490GCF_003438175#DXC13_RS08490
RROmpR
58 565-59 254 nt · Forward (+)
DXC13_RS08495GCF_003438175#DXC13_RS08495
HKClassicCurrent focus
59 378-60 877 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS08495The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1482544
Simplified PFAM architecture for HKOC_1482544
PFAM domain coverage: 228 / 499 aa (45.7%)
1 aa499 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[266-330] | HATPase_c[379-488]
- Domain count: 3
- Matched identifier: HKOC_1482544
- Positioned domains: HAMP 200-252 ; HisKA 266-330 ; HATPase_c 379-488
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS08495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key