1 HAMP#1
178-241 aa · 64 aa · 13.4% of protein
Raw token
HAMP:178:0.00000000000000342:241:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS06650
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438175
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS06650Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 476 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-313 aa · 61 aa · 12.8% of protein
Raw token
HisKA:253:0.00000000127:313:61:643 HATPase_c#3
364-471 aa · 108 aa · 22.7% of protein
Raw token
HATPase_c:364:2.39e-27:471:109:109- Raw architecture: HAMP:178:0.00000000000000342:241:64:69#HisKA:253:0.00000000127:313:61:64#HATPase_c:364:2.39e-27:471:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000008.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1879-3968Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_06650RefSeq proteinWP_117714819.1
Context group ID
GCF_003438175::NZ_QSTI01000008.1::G00053Context members
DXC13_RS06645DXC13_RS06650
Partner locus tags
DXC13_RS06645DXC13_RS06650
Partner old locus tags
DXC13_06645DXC13_06650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117714819.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4X7S9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4X7S9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS06650Primary locus identifier stored in the genes table.
Old locus tagDXC13_06650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000008.1Sequence record reported by the local genomic context database.
Genomic interval2 538-3 968 nt1 431 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 879-3 968 ntGCF_003438175::NZ_QSTI01000008.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000008.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span1 879-3 968 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 879 nt3 968 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS06645GCF_003438175#DXC13_RS06645
RROmpR
1 879-2 541 nt · Forward (+)
DXC13_RS06650GCF_003438175#DXC13_RS06650
HKClassicCurrent focus
2 538-3 968 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS06650The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1657269
Simplified PFAM architecture for HKOC_1657269
PFAM domain coverage: 218 / 476 aa (45.8%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-241] | HisKA[254-314] | HATPase_c[365-470]
- Domain count: 3
- Matched identifier: HKOC_1657269
- Positioned domains: HAMP 191-241 ; HisKA 254-314 ; HATPase_c 365-470
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS06650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key