1 HisKA#1
79-147 aa · 69 aa · 21.9% of protein
Raw token
HisKA:79:0.00000000000712:147:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS05820
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438175
ClassHKTypeClassicLength315 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438175#DXC13_RS05820Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length315 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 315 aa (60.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa315 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
194-313 aa · 120 aa · 38.1% of protein
Raw token
HATPase_c:194:0.0000000000000016:313:124:109- Raw architecture: HisKA:79:0.00000000000712:147:69:64#HATPase_c:194:0.0000000000000016:313:124:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438175::NZ_QSTI01000006.1::G00047
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span135975-136922Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_05820RefSeq proteinWP_117714730.1
Context group ID
GCF_003438175::NZ_QSTI01000006.1::G00047Context members
DXC13_RS05820
Partner locus tags
DXC13_RS05820
Partner old locus tags
DXC13_05820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117714730.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4X944Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4X944_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS05820Primary locus identifier stored in the genes table.
Old locus tagDXC13_05820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000006.1Sequence record reported by the local genomic context database.
Genomic interval135 975-136 922 nt948 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span135 975-136 922 ntGCF_003438175::NZ_QSTI01000006.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000006.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span135 975-136 922 nt948 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 975 nt136 922 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC13_RS05820GCF_003438175#DXC13_RS05820
HKClassicCurrent focus
135 975-136 922 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS05820The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2873503
Simplified PFAM architecture for HKOC_2873503
PFAM domain coverage: 173 / 315 aa (54.9%)
1 aa315 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-146] | HATPase_c[196-310]
- Domain count: 2
- Matched identifier: HKOC_2873503
- Positioned domains: HisKA 89-146 ; HATPase_c 196-310
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS05820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key