1 Response_reg#1
4-118 aa · 115 aa · 48.5% of protein
Raw token
Response_reg:4:7.45e-24:118:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS05560
Response regulator LytTR family
Agathobacter rectalis · GCF_003438175
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438175#DXC13_RS05560Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 237 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
147-229 aa · 83 aa · 35.0% of protein
Raw token
LytTR:147:0.000000000000113:229:88:98- Raw architecture: Response_reg:4:7.45e-24:118:117:111#LytTR:147:0.000000000000113:229:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438175::NZ_QSTI01000006.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span83318-84031Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_05560RefSeq proteinWP_117685729.1
Context group ID
GCF_003438175::NZ_QSTI01000006.1::G00046Context members
DXC13_RS05560
Partner locus tags
DXC13_RS05560
Partner old locus tags
DXC13_05560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117685729.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4M2T1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4M2T1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS05560Primary locus identifier stored in the genes table.
Old locus tagDXC13_05560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000006.1Sequence record reported by the local genomic context database.
Genomic interval83 318-84 031 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 318-84 031 ntGCF_003438175::NZ_QSTI01000006.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000006.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span83 318-84 031 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 318 nt84 031 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC13_RS05560GCF_003438175#DXC13_RS05560
RRLytTRCurrent focus
83 318-84 031 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436785#DXD13_RS06415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968433
Simplified PFAM architecture for RROC_0968433
PFAM domain coverage: 201 / 237 aa (84.8%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[142-228]
- Domain count: 2
- Matched identifier: RROC_0968433
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; LytTR 142-228 ; LytTR 142-228
Cluster members and taxonomy
Representative gene: GCF_003436785#DXD13_RS06415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key