1 Response_reg#1
8-114 aa · 107 aa · 47.6% of protein
Raw token
Response_reg:8:1.87e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS04325
Response regulator OmpR family
Agathobacter rectalis · GCF_003438175
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS04325Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 225 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:148:8.18e-25:223:77:77- Raw architecture: Response_reg:8:1.87e-35:114:110:111#Trans_reg_C:148:8.18e-25:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000005.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4031-5796Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_04325RefSeq proteinWP_005361173.1
Context group ID
GCF_003438175::NZ_QSTI01000005.1::G00043Context members
DXC13_RS04325DXC13_RS04330
Partner locus tags
DXC13_RS04325DXC13_RS04330
Partner old locus tags
DXC13_04325DXC13_04330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005361173.1Primary protein accession used for annex mappings.
UniProt accessionA5Z6V6Primary UniProt accession resolved in the annex database.
UniProt IDA5Z6V6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS04325Primary locus identifier stored in the genes table.
Old locus tagDXC13_04325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000005.1Sequence record reported by the local genomic context database.
Genomic interval4 031-4 708 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 031-5 796 ntGCF_003438175::NZ_QSTI01000005.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000005.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span4 031-5 796 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 031 nt5 796 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS04325GCF_003438175#DXC13_RS04325
RROmpRCurrent focus
4 031-4 708 nt · Forward (+)
DXC13_RS04330GCF_003438175#DXC13_RS04330
HKClassic
4 714-5 796 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS05910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463186
Simplified PFAM architecture for RROC_1463186
PFAM domain coverage: 180 / 225 aa (80.0%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-113] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1463186
- Positioned domains: Response_reg 8-113 ; Response_reg 8-113 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS05910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key