1 Response_reg#1
4-96 aa · 93 aa · 36.3% of protein
Raw token
Response_reg:4:0.00000000000106:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS04315
Response regulator, FrzZ family
Agathobacter rectalis · GCF_003438175
ClassRRTypeFrzZLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003438175#DXC13_RS04315Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 256 aa (81.3%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 Response_reg#2
137-251 aa · 115 aa · 44.9% of protein
Raw token
Response_reg:137:0.000000694:251:115:111- Raw architecture: Response_reg:4:0.00000000000106:96:93:111#Response_reg:137:0.000000694:251:115:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003438175::NZ_QSTI01000005.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2618-3388Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_04315RefSeq proteinWP_117714595.1
Context group ID
GCF_003438175::NZ_QSTI01000005.1::G00042Context members
DXC13_RS04315
Partner locus tags
DXC13_RS04315
Partner old locus tags
DXC13_04315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117714595.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4X9K0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4X9K0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS04315Primary locus identifier stored in the genes table.
Old locus tagDXC13_04315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000005.1Sequence record reported by the local genomic context database.
Genomic interval2 618-3 388 nt771 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 618-3 388 ntGCF_003438175::NZ_QSTI01000005.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000005.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span2 618-3 388 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 618 nt3 388 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC13_RS04315GCF_003438175#DXC13_RS04315
RRFrzZCurrent focus
2 618-3 388 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS04315The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0674746
Simplified PFAM architecture for RROC_0674746
PFAM domain coverage: 99 / 256 aa (38.7%)
1 aa256 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-102]
- Domain count: 1
- Matched identifier: RROC_0674746
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS04315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key