1 HAMP#1
168-239 aa · 72 aa · 14.7% of protein
Raw token
HAMP:168:0.0000000000242:239:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS03765
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438175
ClassHKTypeClassicLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS03765Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 491 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation3 items
2 HisKA#2
264-331 aa · 68 aa · 13.8% of protein
Raw token
HisKA:264:0.0000000000000579:331:68:643 HATPase_c#3
376-485 aa · 110 aa · 22.4% of protein
Raw token
HATPase_c:376:9.05e-20:485:114:109- Raw architecture: HAMP:168:0.0000000000242:239:72:69#HisKA:264:0.0000000000000579:331:68:64#HATPase_c:376:9.05e-20:485:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000004.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83065-85265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_03765RefSeq proteinWP_117714540.1
Context group ID
GCF_003438175::NZ_QSTI01000004.1::G00030Context members
DXC13_RS03765DXC13_RS03770
Partner locus tags
DXC13_RS03765DXC13_RS03770
Partner old locus tags
DXC13_03765DXC13_03770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117714540.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4XAN4Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4XAN4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS03765Primary locus identifier stored in the genes table.
Old locus tagDXC13_03765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000004.1Sequence record reported by the local genomic context database.
Genomic interval83 065-84 540 nt1 476 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 065-85 265 ntGCF_003438175::NZ_QSTI01000004.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000004.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span83 065-85 265 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 065 nt85 265 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS03765GCF_003438175#DXC13_RS03765
HKClassicCurrent focus
83 065-84 540 nt · Reverse (-)
DXC13_RS03770GCF_003438175#DXC13_RS03770
RROmpR
84 585-85 265 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS03765The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1528538
Simplified PFAM architecture for HKOC_1528538
PFAM domain coverage: 231 / 491 aa (47.0%)
1 aa491 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-239] | HisKA[264-331] | HATPase_c[377-485]
- Domain count: 3
- Matched identifier: HKOC_1528538
- Positioned domains: HAMP 186-239 ; HisKA 264-331 ; HATPase_c 377-485
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS03765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key