1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:3.78e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC48_RS04040
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_003437825
ClassHKTypeClassicLength871 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437825#DXC48_RS04040Stable P2CS identifier used across views.
GenomeGCF_003437825Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length871 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 871 aa (17.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000569:439:104:109- Raw architecture: HisKA_3:242:3.78e-18:304:63:68#HATPase_c:353:0.000000000000569:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437825::NZ_QSSK01000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6635-10073Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC48_04050RefSeq proteinWP_181971679.1
Context group ID
GCF_003437825::NZ_QSSK01000002.1::G00006Context members
DXC48_RS04040DXC48_RS04045
Partner locus tags
DXC48_RS04040DXC48_RS04045
Partner old locus tags
DXC48_04050DXC48_04055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181971679.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC48_RS04040Primary locus identifier stored in the genes table.
Old locus tagDXC48_04050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSSK01000002.1Sequence record reported by the local genomic context database.
Genomic interval6 635-9 250 nt2 616 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 635-10 073 ntGCF_003437825::NZ_QSSK01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437825::NZ_QSSK01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSSK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span6 635-10 073 nt3 439 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 635 nt10 073 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC48_RS04040GCF_003437825#DXC48_RS04040
HKClassicCurrent focus
6 635-9 250 nt · Forward (+)
DXC48_RS04045GCF_003437825#DXC48_RS04045
RRNarL
9 327-10 073 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437825#DXC48_RS04040The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0457424
Simplified PFAM architecture for HKOC_0457424
PFAM domain coverage: 429 / 871 aa (49.3%)
1 aa871 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-693]
- Domain count: 4
- Matched identifier: HKOC_0457424
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-693
Cluster members and taxonomy
Representative gene: GCF_003437825#DXC48_RS04040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003437825
AssemblyASM343782v1 · Scaffoldhaploid
Genome composition2 206 288 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key