1 HisKA#1
235-296 aa · 62 aa · 13.7% of protein
Raw token
HisKA:235:0.00000000000018:296:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS16610
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS16610Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 454 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
345-453 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:345:6.86e-21:453:109:109- Raw architecture: HisKA:235:0.00000000000018:296:62:64#HATPase_c:345:6.86e-21:453:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000028.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3092-5109Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_16620RefSeq proteinWP_117628803.1
Context group ID
GCF_003437665::NZ_QSRF01000028.1::G00030Context members
DXC87_RS16605DXC87_RS16610
Partner locus tags
DXC87_RS16605DXC87_RS16610
Partner old locus tags
DXC87_16615DXC87_16620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117628803.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS16610Primary locus identifier stored in the genes table.
Old locus tagDXC87_16620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000028.1Sequence record reported by the local genomic context database.
Genomic interval3 745-5 109 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 092-5 109 ntGCF_003437665::NZ_QSRF01000028.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000028.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000028.1All displayed genes belong to this local TCS context.
Neighborhood span3 092-5 109 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 092 nt5 109 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS16605GCF_003437665#DXC87_RS16605
RROmpR
3 092-3 754 nt · Forward (+)
DXC87_RS16610GCF_003437665#DXC87_RS16610
HKClassicCurrent focus
3 745-5 109 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS16610The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1915079
Simplified PFAM architecture for HKOC_1915079
PFAM domain coverage: 170 / 454 aa (37.4%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-296] | HATPase_c[345-453]
- Domain count: 2
- Matched identifier: HKOC_1915079
- Positioned domains: HisKA 236-296 ; HATPase_c 345-453
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS16610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key