1 HisKA#1
230-293 aa · 64 aa · 14.0% of protein
Raw token
HisKA:230:0.00000000506:293:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS15340
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS15340Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 457 aa (37.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-450 aa · 108 aa · 23.6% of protein
Raw token
HATPase_c:343:3.16e-19:450:109:109- Raw architecture: HisKA:230:0.00000000506:293:64:64#HATPase_c:343:3.16e-19:450:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000021.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10338-12406Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_15350RefSeq proteinWP_117628697.1
Context group ID
GCF_003437665::NZ_QSRF01000021.1::G00027Context members
DXC87_RS15335DXC87_RS15340
Partner locus tags
DXC87_RS15335DXC87_RS15340
Partner old locus tags
DXC87_15345DXC87_15350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117628697.1Primary protein accession used for annex mappings.
UniProt accessionA0A395X1T5Primary UniProt accession resolved in the annex database.
UniProt IDA0A395X1T5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS15340Primary locus identifier stored in the genes table.
Old locus tagDXC87_15350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000021.1Sequence record reported by the local genomic context database.
Genomic interval11 033-12 406 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 338-12 406 ntGCF_003437665::NZ_QSRF01000021.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000021.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000021.1All displayed genes belong to this local TCS context.
Neighborhood span10 338-12 406 nt2 069 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 338 nt12 406 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS15335GCF_003437665#DXC87_RS15335
RROmpR
10 338-11 036 nt · Forward (+)
DXC87_RS15340GCF_003437665#DXC87_RS15340
HKClassicCurrent focus
11 033-12 406 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS15340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1877221
Simplified PFAM architecture for HKOC_1877221
PFAM domain coverage: 170 / 457 aa (37.2%)
1 aa457 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[230-293] | HATPase_c[344-449]
- Domain count: 2
- Matched identifier: HKOC_1877221
- Positioned domains: HisKA 230-293 ; HATPase_c 344-449
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS15340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key