1 Response_reg#1
6-116 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:6:9.61e-31:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS15335
Response regulator OmpR family
Blautia obeum · GCF_003437665
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS15335Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 232 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-225 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:148:2.19e-17:225:78:77- Raw architecture: Response_reg:6:9.61e-31:116:112:111#Trans_reg_C:148:2.19e-17:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000021.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10338-12406Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_15345RefSeq proteinWP_117628696.1
Context group ID
GCF_003437665::NZ_QSRF01000021.1::G00027Context members
DXC87_RS15335DXC87_RS15340
Partner locus tags
DXC87_RS15335DXC87_RS15340
Partner old locus tags
DXC87_15345DXC87_15350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117628696.1Primary protein accession used for annex mappings.
UniProt accessionA0A395X3V6Primary UniProt accession resolved in the annex database.
UniProt IDA0A395X3V6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS15335Primary locus identifier stored in the genes table.
Old locus tagDXC87_15345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000021.1Sequence record reported by the local genomic context database.
Genomic interval10 338-11 036 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 338-12 406 ntGCF_003437665::NZ_QSRF01000021.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000021.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000021.1All displayed genes belong to this local TCS context.
Neighborhood span10 338-12 406 nt2 069 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 338 nt12 406 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS15335GCF_003437665#DXC87_RS15335
RROmpRCurrent focus
10 338-11 036 nt · Forward (+)
DXC87_RS15340GCF_003437665#DXC87_RS15340
HKClassic
11 033-12 406 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465235#DWW21_RS18120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0810666
Simplified PFAM architecture for RROC_0810666
PFAM domain coverage: 187 / 244 aa (76.6%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[18-127] | Trans_reg_C[161-237]
- Domain count: 2
- Matched identifier: RROC_0810666
- Positioned domains: Response_reg 18-127 ; Response_reg 18-127 ; Trans_reg_C 161-237 ; Trans_reg_C 161-237
Cluster members and taxonomy
Representative gene: GCF_003465235#DWW21_RS18120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key