1 HAMP#1
176-244 aa · 69 aa · 14.5% of protein
Raw token
HAMP:176:0.00000068:244:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS14060
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS14060Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 475 aa (51.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-314 aa · 66 aa · 13.9% of protein
Raw token
HisKA:249:0.00000000000341:314:66:643 HATPase_c#3
362-471 aa · 110 aa · 23.2% of protein
Raw token
HATPase_c:362:7.94e-30:471:110:109- Raw architecture: HAMP:176:0.00000068:244:71:69#HisKA:249:0.00000000000341:314:66:64#HATPase_c:362:7.94e-30:471:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000017.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28250-30370Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_14070RefSeq proteinWP_005425497.1
Context group ID
GCF_003437665::NZ_QSRF01000017.1::G00018Context members
DXC87_RS14060DXC87_RS14065
Partner locus tags
DXC87_RS14060DXC87_RS14065
Partner old locus tags
DXC87_14070DXC87_14075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005425497.1Primary protein accession used for annex mappings.
UniProt accessionA5ZYC4Primary UniProt accession resolved in the annex database.
UniProt IDA5ZYC4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS14060Primary locus identifier stored in the genes table.
Old locus tagDXC87_14070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000017.1Sequence record reported by the local genomic context database.
Genomic interval28 250-29 677 nt1 428 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 250-30 370 ntGCF_003437665::NZ_QSRF01000017.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000017.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000017.1All displayed genes belong to this local TCS context.
Neighborhood span28 250-30 370 nt2 121 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 250 nt30 370 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS14060GCF_003437665#DXC87_RS14060
HKClassicCurrent focus
28 250-29 677 nt · Reverse (-)
DXC87_RS14065GCF_003437665#DXC87_RS14065
RROmpR
29 681-30 370 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS09700Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1664418
Simplified PFAM architecture for HKOC_1664418
PFAM domain coverage: 176 / 475 aa (37.1%)
1 aa475 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[249-314] | HATPase_c[362-471]
- Domain count: 2
- Matched identifier: HKOC_1664418
- Positioned domains: HisKA 249-314 ; HATPase_c 362-471
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS09700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key