1 Response_reg#1
5-114 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:5:7.41e-24:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS13655
Response regulator OmpR family
Blautia obeum · GCF_003437665
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS13655Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-217 aa · 73 aa · 33.3% of protein
Raw token
Trans_reg_C:145:1.72e-26:217:77:77- Raw architecture: Response_reg:5:7.41e-24:114:112:111#Trans_reg_C:145:1.72e-26:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000016.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50546-52467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_13665RefSeq proteinWP_117628572.1
Context group ID
GCF_003437665::NZ_QSRF01000016.1::G00014Context members
DXC87_RS13655DXC87_RS13660
Partner locus tags
DXC87_RS13655DXC87_RS13660
Partner old locus tags
DXC87_13665DXC87_13670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117628572.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS13655Primary locus identifier stored in the genes table.
Old locus tagDXC87_13665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000016.1Sequence record reported by the local genomic context database.
Genomic interval50 546-51 205 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 546-52 467 ntGCF_003437665::NZ_QSRF01000016.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000016.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000016.1All displayed genes belong to this local TCS context.
Neighborhood span50 546-52 467 nt1 922 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 546 nt52 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS13655GCF_003437665#DXC87_RS13655
RROmpRCurrent focus
50 546-51 205 nt · Forward (+)
DXC87_RS13660GCF_003437665#DXC87_RS13660
HKClassic
51 208-52 467 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS13655The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1777252
Simplified PFAM architecture for RROC_1777252
PFAM domain coverage: 180 / 219 aa (82.2%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-217]
- Domain count: 2
- Matched identifier: RROC_1777252
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-217 ; Trans_reg_C 147-217
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS13655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key