1 HisKA#1
17-69 aa · 53 aa · 23.6% of protein
Raw token
HisKA:17:0.000000194:69:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS11945
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437665#DXC87_RS11945Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 225 aa (70.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
121-225 aa · 105 aa · 46.7% of protein
Raw token
HATPase_c:121:1.45e-32:225:109:109- Raw architecture: HisKA:17:0.000000194:69:53:64#HATPase_c:121:1.45e-32:225:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437665::NZ_QSRF01000013.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span47763-48440Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_11950RefSeq proteinWP_117628416.1
Context group ID
GCF_003437665::NZ_QSRF01000013.1::G00008Context members
DXC87_RS11945
Partner locus tags
DXC87_RS11945
Partner old locus tags
DXC87_11950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117628416.1Primary protein accession used for annex mappings.
UniProt accessionA0A395X901Primary UniProt accession resolved in the annex database.
UniProt IDA0A395X901_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS11945Primary locus identifier stored in the genes table.
Old locus tagDXC87_11950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000013.1Sequence record reported by the local genomic context database.
Genomic interval47 763-48 440 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 763-48 440 ntGCF_003437665::NZ_QSRF01000013.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000013.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000013.1All displayed genes belong to this local TCS context.
Neighborhood span47 763-48 440 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 763 nt48 440 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC87_RS11945GCF_003437665#DXC87_RS11945
HKClassicCurrent focus
47 763-48 440 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS11945The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2927222
Simplified PFAM architecture for HKOC_2927222
PFAM domain coverage: 159 / 225 aa (70.7%)
1 aa225 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[17-71] | HATPase_c[121-224]
- Domain count: 2
- Matched identifier: HKOC_2927222
- Positioned domains: HisKA 17-71 ; HATPase_c 121-224
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS11945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key