1 HisKA#1
639-705 aa · 67 aa · 7.8% of protein
Raw token
HisKA:639:0.00000000000000139:705:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS11585
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength859 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS11585Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length859 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 859 aa (18.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa859 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
751-843 aa · 93 aa · 10.8% of protein
Raw token
HATPase_c:751:0.0000000000214:843:97:109- Raw architecture: HisKA:639:0.00000000000000139:705:67:64#HATPase_c:751:0.0000000000214:843:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000012.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102922-106278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_11590RefSeq proteinWP_117628375.1
Context group ID
GCF_003437665::NZ_QSRF01000012.1::G00007Context members
DXC87_RS11585DXC87_RS11590
Partner locus tags
DXC87_RS11585DXC87_RS11590
Partner old locus tags
DXC87_11590DXC87_11595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117628375.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS11585Primary locus identifier stored in the genes table.
Old locus tagDXC87_11590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000012.1Sequence record reported by the local genomic context database.
Genomic interval102 922-105 501 nt2 580 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 922-106 278 ntGCF_003437665::NZ_QSRF01000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000012.1All displayed genes belong to this local TCS context.
Neighborhood span102 922-106 278 nt3 357 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 922 nt106 278 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS11585GCF_003437665#DXC87_RS11585
HKClassicCurrent focus
102 922-105 501 nt · Reverse (-)
DXC87_RS11590GCF_003437665#DXC87_RS11590
RROmpR
105 586-106 278 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS11585The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0473359
Simplified PFAM architecture for HKOC_0473359
PFAM domain coverage: 158 / 859 aa (18.4%)
1 aa859 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[639-704] | HATPase_c[752-843]
- Domain count: 2
- Matched identifier: HKOC_0473359
- Positioned domains: HisKA 639-704 ; HATPase_c 752-843
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS11585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key