1 HAMP#1
70-139 aa · 70 aa · 18.2% of protein
Raw token
HAMP:70:0.000000000000109:139:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS09265
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS09265Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 385 aa (66.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
150-217 aa · 68 aa · 17.7% of protein
Raw token
HisKA:150:0.00000000000000606:217:68:643 HATPase_c#3
264-380 aa · 117 aa · 30.4% of protein
Raw token
HATPase_c:264:7.93e-32:380:117:109- Raw architecture: HAMP:70:0.000000000000109:139:70:69#HisKA:150:0.00000000000000606:217:68:64#HATPase_c:264:7.93e-32:380:117:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000009.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44416-46259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_09265RefSeq proteinWP_055056463.1
Context group ID
GCF_003437665::NZ_QSRF01000009.1::G00049Context members
DXC87_RS09260DXC87_RS09265
Partner locus tags
DXC87_RS09260DXC87_RS09265
Partner old locus tags
DXC87_09260DXC87_09265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055056463.1Primary protein accession used for annex mappings.
UniProt accessionA0A174QYB2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174QYB2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS09265Primary locus identifier stored in the genes table.
Old locus tagDXC87_09265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000009.1Sequence record reported by the local genomic context database.
Genomic interval45 102-46 259 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 416-46 259 ntGCF_003437665::NZ_QSRF01000009.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000009.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000009.1All displayed genes belong to this local TCS context.
Neighborhood span44 416-46 259 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 416 nt46 259 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS09260GCF_003437665#DXC87_RS09260
RROmpR
44 416-45 105 nt · Reverse (-)
DXC87_RS09265GCF_003437665#DXC87_RS09265
HKClassicCurrent focus
45 102-46 259 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS12590Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2565676
Simplified PFAM architecture for HKOC_2565676
PFAM domain coverage: 233 / 385 aa (60.5%)
1 aa385 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[87-139] | HisKA[151-216] | HATPase_c[265-378]
- Domain count: 3
- Matched identifier: HKOC_2565676
- Positioned domains: HAMP 87-139 ; HisKA 151-216 ; HATPase_c 265-378
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS12590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key