1 GAF_3#1
214-337 aa · 124 aa · 21.2% of protein
Raw token
GAF_3:214:0.0000225:337:129:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS07320
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength584 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS07320Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length584 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage305 / 584 aa (52.2%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa584 aa
Domain-by-domain annotation3 items
2 HisKA#2
357-424 aa · 68 aa · 11.6% of protein
Raw token
HisKA:357:0.000000000132:424:68:643 HATPase_c#3
467-579 aa · 113 aa · 19.3% of protein
Raw token
HATPase_c:467:1.9e-29:579:113:109- Raw architecture: GAF_3:214:0.0000225:337:129:129#HisKA:357:0.000000000132:424:68:64#HATPase_c:467:1.9e-29:579:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000006.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119888-122159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_07320RefSeq proteinWP_242999885.1
Context group ID
GCF_003437665::NZ_QSRF01000006.1::G00041Context members
DXC87_RS07320DXC87_RS07325
Partner locus tags
DXC87_RS07320DXC87_RS07325
Partner old locus tags
DXC87_07320DXC87_07325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242999885.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS07320Primary locus identifier stored in the genes table.
Old locus tagDXC87_07320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000006.1Sequence record reported by the local genomic context database.
Genomic interval119 888-121 465 nt1 578 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 888-122 159 ntGCF_003437665::NZ_QSRF01000006.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000006.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000006.1All displayed genes belong to this local TCS context.
Neighborhood span119 888-122 159 nt2 272 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 888 nt122 159 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS07320GCF_003437665#DXC87_RS07320
HKClassicCurrent focus
119 888-121 465 nt · Forward (+)
DXC87_RS07325GCF_003437665#DXC87_RS07325
RROmpR
121 458-122 159 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS07320The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1143274
Simplified PFAM architecture for HKOC_1143274
PFAM domain coverage: 287 / 584 aa (49.1%)
1 aa584 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[87-194] | HisKA[357-424] | HATPase_c[468-578]
- Domain count: 3
- Matched identifier: HKOC_1143274
- Positioned domains: DUF4118 87-194 ; HisKA 357-424 ; HATPase_c 468-578
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS07320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key