1 Response_reg#1
4-113 aa · 110 aa · 23.0% of protein
Raw token
Response_reg:4:2.28e-29:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS05890
Response regulator, unclassified
Blautia obeum · GCF_003437665
ClassRRTypeunclassifiedLength478 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437665#DXC87_RS05890Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length478 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 478 aa (40.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa478 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
384-425 aa · 42 aa · 8.8% of protein
Raw token
HTH_AraC:384:0.0000000112:425:42:423 HTH_AraC#3
433-473 aa · 41 aa · 8.6% of protein
Raw token
HTH_AraC:433:0.0000000387:473:41:42- Raw architecture: Response_reg:4:2.28e-29:113:110:111#HTH_AraC:384:0.0000000112:425:42:42#HTH_AraC:433:0.0000000387:473:41:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437665::NZ_QSRF01000005.1::G00034
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39855-41291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_05890RefSeq proteinWP_117627941.1
Context group ID
GCF_003437665::NZ_QSRF01000005.1::G00034Context members
DXC87_RS05890
Partner locus tags
DXC87_RS05890
Partner old locus tags
DXC87_05890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117627941.1Primary protein accession used for annex mappings.
UniProt accessionA0A395XAR7Primary UniProt accession resolved in the annex database.
UniProt IDA0A395XAR7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS05890Primary locus identifier stored in the genes table.
Old locus tagDXC87_05890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000005.1Sequence record reported by the local genomic context database.
Genomic interval39 855-41 291 nt1 437 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 855-41 291 ntGCF_003437665::NZ_QSRF01000005.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000005.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000005.1All displayed genes belong to this local TCS context.
Neighborhood span39 855-41 291 nt1 437 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 855 nt41 291 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC87_RS05890GCF_003437665#DXC87_RS05890
RRunclassifiedCurrent focus
39 855-41 291 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS05890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0187166
Simplified PFAM architecture for RROC_0187166
PFAM domain coverage: 190 / 478 aa (39.7%)
1 aa478 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[397-474]
- Domain count: 2
- Matched identifier: RROC_0187166
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 397-474 ; HTH_18 397-474
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS05890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key