1 HAMP#1
283-349 aa · 67 aa · 11.8% of protein
Raw token
HAMP:283:0.000000000117:349:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS05645
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS05645Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 567 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-443 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:365:1.24e-27:443:79:803 HATPase_c#3
461-561 aa · 101 aa · 17.8% of protein
Raw token
HATPase_c:461:0.00000000000000575:561:110:109- Raw architecture: HAMP:283:0.000000000117:349:67:69#His_kinase:365:1.24e-27:443:79:80#HATPase_c:461:0.00000000000000575:561:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000004.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span234556-237772Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_05645RefSeq proteinWP_055065995.1
Context group ID
GCF_003437665::NZ_QSRF01000004.1::G00033Context members
DXC87_RS05640DXC87_RS05645
Partner locus tags
DXC87_RS05640DXC87_RS05645
Partner old locus tags
DXC87_05640DXC87_05645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065995.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BJK5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BJK5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS05645Primary locus identifier stored in the genes table.
Old locus tagDXC87_05645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000004.1Sequence record reported by the local genomic context database.
Genomic interval236 069-237 772 nt1 704 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span234 556-237 772 ntGCF_003437665::NZ_QSRF01000004.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000004.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span234 556-237 772 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
234 556 nt237 772 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS05640GCF_003437665#DXC87_RS05640
RRunclassified
234 556-236 085 nt · Forward (+)
DXC87_RS05645GCF_003437665#DXC87_RS05645
HKClassicCurrent focus
236 069-237 772 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471125#DW272_RS11675Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053608
Simplified PFAM architecture for HKOC_1053608
PFAM domain coverage: 225 / 600 aa (37.5%)
1 aa600 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[331-381] | His_kinase[398-471] | HATPase_c[495-594]
- Domain count: 3
- Matched identifier: HKOC_1053608
- Positioned domains: HAMP 331-381 ; His_kinase 398-471 ; HATPase_c 495-594
Cluster members and taxonomy
Representative gene: GCF_003471125#DW272_RS11675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key