1 Response_reg#1
4-116 aa · 113 aa · 22.2% of protein
Raw token
Response_reg:4:1.56e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS05640
Response regulator, unclassified
Blautia obeum · GCF_003437665
ClassRRTypeunclassifiedLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS05640Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 509 aa (37.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
411-450 aa · 40 aa · 7.9% of protein
Raw token
HTH_AraC:411:0.00000102:450:40:423 HTH_AraC#3
463-500 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:463:0.0000000104:500:38:42- Raw architecture: Response_reg:4:1.56e-34:116:113:111#HTH_AraC:411:0.00000102:450:40:42#HTH_AraC:463:0.0000000104:500:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000004.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span234556-237772Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_05640RefSeq proteinWP_117627916.1
Context group ID
GCF_003437665::NZ_QSRF01000004.1::G00033Context members
DXC87_RS05640DXC87_RS05645
Partner locus tags
DXC87_RS05640DXC87_RS05645
Partner old locus tags
DXC87_05640DXC87_05645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117627916.1Primary protein accession used for annex mappings.
UniProt accessionA0A395X6P8Primary UniProt accession resolved in the annex database.
UniProt IDA0A395X6P8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS05640Primary locus identifier stored in the genes table.
Old locus tagDXC87_05640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000004.1Sequence record reported by the local genomic context database.
Genomic interval234 556-236 085 nt1 530 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span234 556-237 772 ntGCF_003437665::NZ_QSRF01000004.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000004.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span234 556-237 772 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
234 556 nt237 772 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS05640GCF_003437665#DXC87_RS05640
RRunclassifiedCurrent focus
234 556-236 085 nt · Forward (+)
DXC87_RS05645GCF_003437665#DXC87_RS05645
HKClassic
236 069-237 772 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS05640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0147568
Simplified PFAM architecture for RROC_0147568
PFAM domain coverage: 191 / 509 aa (37.5%)
1 aa509 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[422-500]
- Domain count: 2
- Matched identifier: RROC_0147568
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 422-500 ; HTH_18 422-500
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS05640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key