1 His_kinase#1
122-201 aa · 80 aa · 23.1% of protein
Raw token
His_kinase:122:3.32e-32:201:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS00585
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS00585Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 347 aa (55.0%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
225-335 aa · 111 aa · 32.0% of protein
Raw token
HATPase_c:225:0.00000000000357:335:112:109- Raw architecture: His_kinase:122:3.32e-32:201:80:80#HATPase_c:225:0.00000000000357:335:112:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129815-132509Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_00585RefSeq proteinWP_005427984.1
Context group ID
GCF_003437665::NZ_QSRF01000001.1::G00003Context members
DXC87_RS00580DXC87_RS00585
Partner locus tags
DXC87_RS00580DXC87_RS00585
Partner old locus tags
DXC87_00580DXC87_00585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005427984.1Primary protein accession used for annex mappings.
UniProt accessionA5ZMK5Primary UniProt accession resolved in the annex database.
UniProt IDA5ZMK5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS00585Primary locus identifier stored in the genes table.
Old locus tagDXC87_00585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000001.1Sequence record reported by the local genomic context database.
Genomic interval131 466-132 509 nt1 044 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 815-132 509 ntGCF_003437665::NZ_QSRF01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span129 815-132 509 nt2 695 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 815 nt132 509 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS00580GCF_003437665#DXC87_RS00580
RRunclassified
129 815-131 404 nt · Forward (+)
DXC87_RS00585GCF_003437665#DXC87_RS00585
HKClassicCurrent focus
131 466-132 509 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS15605Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2810183
Simplified PFAM architecture for HKOC_2810183
PFAM domain coverage: 191 / 347 aa (55.0%)
1 aa347 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[122-201] | HATPase_c[225-335]
- Domain count: 2
- Matched identifier: HKOC_2810183
- Positioned domains: His_kinase 122-201 ; HATPase_c 225-335
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS15605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key